Package: crane 0.3.2

Joe Zhu

crane: Supplements the 'gtsummary' Package for Pharmaceutical Reporting

Tables summarizing clinical trial results are often complex and require detailed tailoring prior to submission to a health authority. The 'crane' package supplements the functionality of the 'gtsummary' package for creating these often highly bespoke tables in the pharmaceutical industry.

Authors:Daniel D. Sjoberg [aut], Emily de la Rua [aut], Davide Garolini [aut], Chi Zhang [aut], Abinaya Yogasekaram [ctb], Joe Zhu [cre], Jan Szczypiński [aut], F. Hoffmann-La Roche AG [cph, fnd]

crane_0.3.2.tar.gz
crane_0.3.2.zip(r-4.7)crane_0.3.2.zip(r-4.6)crane_0.3.2.zip(r-4.5)
crane_0.3.2.tgz(r-4.6-any)crane_0.3.2.tgz(r-4.5-any)
crane_0.3.2.tar.gz(r-4.7-any)crane_0.3.2.tar.gz(r-4.6-any)
crane_0.3.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
crane/json (API)
NEWS

# Install 'crane' in R:

install.packages('crane', repos = c('https://insightsengineering.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/insightsengineering/crane/issues

Pkgdown/docs site:https://insightsengineering.github.io

On CRAN:

gt reproducible-research summary-statistics

6.73 score 14 stars 16 scripts 647 downloads 57 exports 88 dependencies

Last updated from:e6e535d371 (on v0.3.2). Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	342
source / vignettes	OK	265
linux-release-x86_64	OK	353
macos-release-arm64	OK	208
macos-oldrel-arm64	OK	236
windows-devel	OK	332
windows-release	OK	319
windows-oldrel	OK	206
wasm-release	OK	156

Exports:%>%add_blank_rows add_difference_row add_forest add_grade_column add_hierarchical_count_row add_overall adjust_stat_columns_wrap annotate_coxph annotate_lineplot_df annotate_pkc_df annotate_riskdf annotate_surv_med ard_tabulate_abnormal_by_baseline df_add_poolings filter_hierarchical g_lineplot g_lineplot_table get_cox_pairwise_df get_mmrm_results gg_km gg_lineplot gg_mmrm_lineplot gg_pkc_lineplot label_roche_number label_roche_percent label_roche_pvalue label_roche_ratio modify_header_rm_md modify_zero_recode preprocess_lineplot_data process_survfit remove_duplicate_keys reverse_ci reverse_rate_difference sort_hierarchical style_roche_number style_roche_percent style_roche_pvalue style_roche_ratio tbl_baseline_chg tbl_coxph tbl_demographics tbl_hierarchical_incidence_rate tbl_hierarchical_rate_and_count tbl_hierarchical_rate_by_grade tbl_listing tbl_mmrm tbl_null_report tbl_rmpt tbl_roche_subgroups tbl_roche_summary tbl_shift tbl_survfit_quantiles tbl_survfit_times tbl_with_pools theme_gtsummary_roche

Dependencies:askpass backports base64enc bigD bitops broom bslib cachem cards cardx cli commonmark cowplot cpp11 curl data.table digest dplyr evaluate farver fastmap flextable fontawesome fontBitstreamVera fontLiberation fontquiver fs gdtools generics ggplot2 glue gt gtable gtsummary highr htmltools htmlwidgets isoband jquerylib jsonlite juicyjuice knitr labeling lattice lifecycle litedown magrittr markdown Matrix memoise mime officer openssl pillar pkgconfig purrr R6 ragg rappdirs RColorBrewer Rcpp reactable reactR rlang rmarkdown S7 sass scales stringi stringr survival sys systemfonts textshaping tibble tidyr tidyselect tinytex utf8 uuid V8 vctrs viridisLite withr xfun xml2 yaml zip

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Add Blank Row	add_blank_rows
Add a Forest Plot Column to a gtsummary Table	add_forest
Add row with counts	add_hierarchical_count_row
Adjust Statistics Columns Wrapping	adjust_stat_columns_wrap
Annotate Kaplan-Meier Plot	annotate_coxph annotate_gg_km annotate_riskdf annotate_surv_med
Annotate Line Plot with Summary Table	annotate_lineplot_df
Annotate PK Plot with Summary Table	annotate_pkc_df
ARD Tabulate Abnormality by Baseline Status	ard_tabulate_abnormal_by_baseline
Add custom pooling to an ADaM dataset list - see DISCLAIMER	df_add_poolings
Generate Table of Pairwise Cox-PH and Log-Rank Results	get_cox_pairwise_df
Kaplan-Meier Plot	gg_km process_survfit
Generate a Summary Line Plot from Raw Data	gg_lineplot
Create MMRM Line Plot	gg_mmrm_lineplot
Plot Pharmacokinetic Concentration Time Profile	gg_pkc_lineplot
Formatting percent and p-values	label_roche label_roche_number label_roche_percent label_roche_pvalue label_roche_ratio style_roche_number style_roche_percent style_roche_pvalue style_roche_ratio
Remove Markdown Syntax from Header	modify_header_rm_md
Zero Count Recode	modify_zero_recode
Reverse Confidence Interval	reverse_ci
Reverse Rate Difference	reverse_rate_difference
Change from Baseline	add_overall.tbl_baseline_chg tbl_baseline_chg
Pairwise Cox Proportional Hazards Table	tbl_coxph
Hierarchical Exposure-Adjusted Incidence Rates	tbl_hierarchical_incidence_rate
Hierarchical Rates and Counts	add_overall.tbl_hierarchical_rate_and_count tbl_hierarchical_rate_and_count
AE Rates by Highest Toxicity Grade	add_grade_column add_overall.tbl_hierarchical_rate_by_grade tbl_hierarchical_rate_by_grade
Create listings from a data frame	remove_duplicate_keys tbl_listing
Get and display MMRM Results in a Formatted Table	get_mmrm_results tbl_mmrm
Creates null report	tbl_null_report
Risk Management Plan Table (RMPT)	add_overall.tbl_rmpt tbl_rmpt
Subgroup Analyses	tbl_roche_subgroups
Roche Summary Table	tbl_roche_summary
Shift Table	add_overall.tbl_shift tbl_shift
Survival Quantiles	add_overall.tbl_survfit_quantiles tbl_survfit_quantiles
Survival Times	add_difference_row.tbl_survfit_times add_overall.tbl_survfit_times tbl_survfit_times
Create a gtsummary table with overlapping pooled columns	tbl_with_pools
Roche Theme	theme_gtsummary_roche