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# CITATION file created with {cffr} R package
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cff-version: 1.2.0
message: 'To cite package "hermes" in publications use:'
type: software
license: Apache-2.0
title: 'hermes: Preprocessing, analyzing, and reporting of RNA-seq data'
version: 1.7.2
doi: 10.32614/CRAN.package.hermes
abstract: Provides classes and functions for quality control, filtering, normalization
  and differential expression analysis of pre-processed `RNA-seq` data. Data can be
  imported from `SummarizedExperiment` as well as `matrix` objects and can be annotated
  from `BioMart`. Filtering for genes without too low expression or containing required
  annotations, as well as filtering for samples with sufficient correlation to other
  samples or total number of reads is supported. The standard normalization methods
  including cpm, rpkm and tpm can be used, and 'DESeq2` as well as voom differential
  expression analyses are available.
authors:
- family-names: Sabanés Bové
  given-names: Daniel
  email: daniel.sabanes_bove@rconis.com
- family-names: Bhatia
  given-names: Namrata
- family-names: Bienert
  given-names: Stefanie
- family-names: Falquet
  given-names: Benoit
- family-names: Li
  given-names: Haocheng
- family-names: Luong
  given-names: Jeff
- family-names: Midori Zhang
  given-names: Lyndsee
  email: zhang.lyndsee@gene.com
- family-names: Richardson
  given-names: Alex
- family-names: Rossomanno
  given-names: Simona
- family-names: Treis
  given-names: Tim
- family-names: Yan
  given-names: Mark
- family-names: Chang
  given-names: Naomi
- family-names: Liao
  given-names: Chendi
  email: chendi.liao@roche.com
- name: Carolyn Zhang
- family-names: Paulson
  given-names: Joseph N.
  email: paulson.joseph@gene.com
repository: https://insightsengineering.r-universe.dev
repository-code: https://github.com/insightsengineering/hermes
commit: fdf4ec82e3643e6a632b2cb29b1db6ae7943e434
url: https://insightsengineering.github.io/hermes/
date-released: '2024-06-27'
contact:
- family-names: Sabanés Bové
  given-names: Daniel
  email: daniel.sabanes_bove@rconis.com