Changes in version 0.6.0 (2025-12-03) Enhancements - Modules now return a teal_report object that contains the data, code and reporter. All the reporter buttons were removed from the modules' UI. - Support case when both variables are categorical in association and bivariate plots. - Improve tm_missing_data visualization (#495). Changes in version 0.5.1 (2025-10-22) - Removed ggmosaic package dependency to avoid being archived on CRAN (#932). Changes in version 0.5.0 (2025-08-20) Breaking changes - Removed the table object decoration in tm_missing_data and tm_outliers (#899). - Removed the summary_table and test_table object decoration in tm_g_distribution (#897). Bug fixes - Fixed "Add to Report" functionality in tm_outliers, tm_missing_data and tm_g_distribution modules (#899 and #897). - Fixes a bug in tm_outliers that fails when data has no join keys (#650). Enhancements - Improved the layout and appearance of the app using bslib components. - Fixed deprecation warning for tern::stack_grobs in tm_g_association (#903). - Allow search feature in tm_file_viewer (#152). - Added remove_zero_columns to tm_t_crosstable to add an option to remove empty columns (#890) Changes in version 0.4.1 (2025-04-01) Bug fixes - Fixes output is not updated when filter is added for the modules: tm_a_pca, tm_a_regression, tm_g_scatterplot, tm_g_association, tm_g_bivariate, tm_g_distribution, tm_g_response, tm_t_crosstable (#870) Changes in version 0.4.0 (2025-02-28) Enhancements - Introduced transformators and decorators argument to modules (#863). - Modules' Show R Code widgets include library calls to boost reproducibility (#786). - Removed Show Warnings modals from modules. Miscellaneous - Soft deprecated datasets_selected argument of modules in favor of datanames. - Soft deprecated show_metadata argument of tm_front_page() in favor of datanames. - Added teal.logger functionality for logging changes in shiny inputs in all modules. - All example data is now sourced from teal.data. - Update tm_g_distribution to not start with validation error (#823). Bug fixes - Fixed a bug in tm_missing_data in "Group by Subject" that was not using reactive data call (#772). - Fixed out-of-bound labels for tm_g_regression (#66). - Fixed a bug in tm_g_association where the app would crash when a selected categorical variable was a factor instead of a character (#645). Changes in version 0.3.0 (2024-03-05) Enhancements - Updated the package docs and vignettes with the new way of specifying data for teal::init(). The data argument will accept a teal_data object. Bug fixes - Outlier labels no longer appear out of bounds in tm_a_regression. - Fixed a bug in tm_outliers when changing the selected variable would cause a popup. Miscellaneous - Removed teal.slice dependencies. - Specified minimal version of package dependencies. Changes in version 0.2.16 Breaking changes - Replaced chunks with simpler qenv class. - Replaced datasets argument containing FilteredData with the new arguments data (tdata object) and filter_panel_api (FilterPanelAPI). Enhancements - Added parent_dataname argument to tm_variable_browser and tm_missing_data to allow specification of parent dataset for these modules. - Improved UI labels and plot panel title in tm_g_association. - Added inputs tm_variable_browser module for text size and plot theme. - Forced ggplot theme to be always selected in all modules. - Updated encodings input checks to use shinyvalidate::InputValidator instead of shiny::validate for better UI experience. Bug fixes - Fixed a bug in tm_g_scatterplot when selected x and y facets were the same. - Fixed a bug in tm_g_distribution to plot the theoretical distribution with newer ggplot2 version. - Fixed a bug in tm_g_bivariate when adding lines checkbox was available if one of x or y was deselected. - Fixed a bug in tm_variable_browser when changing filters would reset the selected variable to the first on the list. Miscellaneous - Removed scda package dependency from examples. - Replaced deprecated ggplot2 functions ..count.., ..density.. and ..prop... - Version bump on forcats dependency. - Replaced scda data generation functions with random.cdisc.data Changes in version 0.2.15 Enhancements - Added the teal.reporter functionality to all modules. - Implemented nestcolor in the examples, refactored tm_a_pca and tm_missing_data to allow using nestcolor. - Added log transformation options to tm_g_scatterplot. - Added server_rendering flag to tm_data_table to control whether the table is rendered server or client side. Bug fixes - Fixed the overflow of very wide tm_a_pca tables. - Fixed the join type functionality in tm_t_crosstable. - Fixed a bug in tm_missing_data when selecting only variables with missings. - Fixed a bug in tm_missing_data when using any_na. Miscellaneous - Moved packages only used in one module from Imports to Suggests in the DESCRIPTION file. - Moved magrittr package from Depends to Imports in the DESCRIPTION file. Changes in version 0.2.14 Enhancements - New teal module tm_front_page to simplify creating a front page for teal apps. - Added a slider widget to control the font size of the label in tm_g_scatterplot. - Output integers without decimal places when selecting points in tm_g_scatterplot. - Improved the names of the code chunks shown in Debug Info. - Improved a validation message when the number of regressors is too big in tm_a_regression.R. Bug fixes - Fixed a wrong validation in tm_a_pca. - Fixed a crash when deselecting the categorical factor in tm_outliers. Miscellaneous - Added a template to the pkgdown site. - Updated package authors. Changes in version 0.2.13 Enhancements - Rewrote modules to use moduleServer and updated call to plot_with_settings_srv after changes in teal.devel. - Fixed tracking of the selection order in data_extract_ui. All selectors can return ordered selection if one specifies ordered = TRUE in select_spec. - Switched order of tm_missing_data combination plot to show data in descending order. - Changed By variable levels output in tm_missing_data to allow numerical sorting. Miscellaneous - Removed unneeded n row in tm_t_crosstable. - Replaced calls to teal::root_modules with teal::modules following deprecation of teal::root_modules. - Adjusted package imports to take into account changes to the teal framework. - Added the "Getting started with teal.modules.general" vignette. - Updated README file. - Moved the ggmosaic package from Depends to Imports in the DESCRIPTION file. Changes in version 0.2.12 Enhancements - Added support for logging with the logger package and added info level logs upon initialization of a module. - Added support for custom arguments for ggplot2::labs and ggplot2::theme in plot based modules. - Added support for custom arguments for rtables::basic_table in tm_t_crosstable. - Updated tm_outliers, tm_g_scatterplotmatrix, tm_g_association, and tm_t_crosstable modules to adopt the new teal.transform::data_merge_srv and teal.transform::data_extract_multiple_srv modules. - Distinguished bars representing NA in plot depicting counts of tm_variable_browser with a different color fill. - Modified the summary statistics table for numeric columns in tm_variable_browser to reflect the plot after outliers are removed. - Added an option to remove missing values in a tm_variable_browser histogram for factor like variables. - Added ability to sort by Variable and Type in tm_variable_browser by separating the variable type icons into their own column. - Updated the Grouped by Subject tab of the tm_missing_data module to present data the same way the Summary tab does. - Added support for NA level in grouping variable in By variable levels table in tm_missing_data module. - Added informative labels for each level of grouping variable in By variable levels table in tm_missing_data module. - Added a checkbox to tm_g_scatterplot to toggle the option to free up the x and y axis scales whenever faceting arguments are provided. - Used browser-side processing in tm_data_table so that Buttons extension could download full table. Added example for advanced usage of DT in the module. Bug fixes - Fixed an error in tm_variable_browser when the selected column is logical(1). - Fixed bugs in the modules' vignette examples. Miscellaneous - Added R version requirement R >= 3.6. - Removed input_id argument from teal.transform::data_merge_module calls in all modules. - Refactored the defunct teal.devel::data_extract_input into its replacement teal.transform::data_extract_ui. - Updated teal.transform::data_merge_srv to use dplyr::inner_join instead of dplyr::left_join in tm_outliers module. - Removed the overlay statistics table in tm_g_distribution module. - Removed dependency on test.nest package. - Removed dependency on utils.nest package and replaced its functions with equivalents from the checkmate package. Changes in version 0.2.11 New features - A new module, tm_file_viewer, was added for the visualization of static files. - A new module, tm_g_distribution, was added for distribution analysis. Bug fixes - Fixed the bar plot order for factor variables in tm_variable_browser. Enhancements tm_variable_browser - Added sparkline support for Date/POSIXct/POSIXlt variable types. - Fixed histograms to contain at least two bars. tm_outliers - Added filter_spec support. - Simplified returned R code. - Support select_spec for categorical variables. tm_g_scatterplotmatrix - Added ordered select input support. - Decoupled the dataset list from the variables list parameters. tm_g_association - Added ordered select input support. tm_t_crosstable - Added ordered select input support. tm_g_scatterplot - Modified the trend line feature of the scatterplot to display the raw equation that will equal the actual y value when the actual x values are plugged in. Miscellaneous - Updated LICENCE and README with new package references. - Added error_on_lint: TRUE to .lintr. - Updated quantile type = 2 argument in tm_variable_browser to be in line with STREAM. Changes in version 0.2.10 Enhancements - Refactored the internal code of all the modules to optimize their performance. - Refactored tm_g_scatterplot to compute trend line statistics using ggpmisc::stat_poly_eq to simplify code and to have labels for each group on the plot. - Refactored tm_g_scatterplot to enable filtering via the Encoding Panel using the new filter_spec functionality. - Added support for logical variables in tm_variable_browser. - Updated tm_outliers to handle non-CDISC datasets. - Updated UI of tm_variable_browser for factor and character variables with more than 30 levels. - Updated sparklines to remove NA values for numeric variables. - Added checkbox to display number of observations on plot to tm_g_scatterplot. - Added validation statements to tm_g_scatterplot handling users choosing more than one facet variable. - Improved performance of tm_variable_browser by a more efficient sparkline generation. - Added the html code type for all datasets labels inside tm_missing_data. - Improved the styling of tool tips in tm_a_regression, tm_missing_data and tm_variable_browser. Changes in version 0.2.9 Enhancements - Added download, enlarge and resize graph options to tm_variable_browser module. - Added download and expand options to the table in tm_t_crosstable. - Enabled selection of custom datasets for tm_variable_browser with datasets_selected argument. - Allowed all dataset variables to be used as grouping variables in by variable levels tab of tm_missing_data, not just those selected to be displayed as rows in the table. - Enabled the brushing of points in NA categories when facetting in tm_g_scatterplot. Bug fixes - Added persistence for the number of entries displayed in data tables. - Removed 'treat variable as factor' checkbox in tm_variable_browser if no graph shown. - Fixed DT length reset in tm_variable_browser on "Show parent dataset variables" checkbox tick. Changes in version 0.2.8 New Module tm_outliers - Added new module tm_outliers to analyze outliers in datasets. Enhancements tm_g_scatterplot - Added max_deg optional argument to scatterplot to allow users to choose the maximum smoothing degree for the trend line. - Added column and row facetting functionality to the scatterplot. - Added possibility to specify type of join in tm_t_crosstable. Incorporate missings resulting from non inner join. Bug Fixes - Fixed edge case errors in tm_missing_data caused by input dataset not having categorical variables or being a data.frame instead of tibble. - Fixed tm_a_pca biplot plot when coloring with a factor/character/numeric with < 6 values variable. - Fixed typo in outlier definition in tm_variable_browser. Miscellaneous - Sparklines no longer shown for numeric variables with more than 100000 rows. - Colors legend for each plot. - Replaced "Show variables other than in ADSL" checkbox to more general "Show parent dataset variables". - Capitalize default module labels. - Some of the outputs of tm_missing_data are conditional to the data being a CDISC data. - Added pre_output and post_output arguments to tm_data_table, tm_missing_data, tm_variable_browser. - Fixed issue in tm_data_table when selecting "show distinct rows" if variable names had non-alphanumeric characters. Changes in version 0.2.7 Enhancements tm_variable_browser - Introduced sparklines for quick, inline variable summaries. - Added option to remove outliers. - Histograms and statistics tables are now displayed for variables of type Date, POSIXct and POSIXlt. - Character variable summary statistics tables are now displayed in decreasing order of occurrences instead of alphabetical. - Display number of non-missing rows n in statistics table for numeric variables. - Added ability to treat numeric variables as categorical. - tm_variable_browser shows from 30 up to 50 levels divided in 2 columns for character/factor variables with more than 30 unique levels. tm_a_regression - Added support for outlier labels to tm_a_regression and provided an additional optional argument, default_outlier_label which can be used to specify the default column used to label outliers. tm_g_scatterplot - Implemented trend line. - Added marginal density plots. - Added option to display rug plot to both axes. - Added shape and point color arguments. The latter users colourpicker::colourInput. - Added size_by variable to scatterplot and allowed for point size to be mapped to a numeric variable. tm_missing_data - Added bar chart to missing data combination plot. - Removed keys from missing data combinations plot in when they have not been selected. tm_g_bivariate - Bivariate plots with two continuous variables now allow adding lines. - Show labels on x axis when selecting a categorical variable and fixed issues when deselecting variables and datasets in the encodings panel (including the addition of meaningful warnings). tm_a_pca - Updated to include Plot settings and Plot specific settings. Miscellaneous - Integrated is_single_dataset argument for data_extract_input function calls to simplify encodings panel UI. - Moved code argument to cdisc_dataset (from cdisc_data) in examples and vignettes. - Require ggmosaic version >= 0.3.0. Changes in version 0.2.6 - Adds additional plot settings such as themes for tm_g_association, tm_g_response, and tm_g_scatterplot, as well as point size and opacity settings for tm_g_association and tm_g_scatterplot. - Replace pickerInput with optionalSelectInput for tm_data_table. - Adds new facet parameter to tm_g_bivariate to specify whether the facet encodings elements should be visible to the user by default. - Replace plot_with_height module with new plot_with_settings module. - Missing data module now uses chunks to get reproducible R code. - New theme for missing data module and new label positioning. - tm_data_table: allow developers to pass arguments to DT::dataTable and use pickerInput to select variables. - tm_g_response a new argument count_labels. Counts might be assessed for the frequency plot too. - Moved missing data module summary plot footer elements to tool tip in encodings panels. - Replaced base plots in tm_a_regression with ggplot2. - Added optional slider to adjust width in plot_with_settings. - Handle Inf in data gracefully. - tm_variable_browser now outputs the summary table for factors with all missing values. Changes in version 0.2.5 - Adds ggplot call inside chunks in modules. - Pass on dataname to get_rcode_srv. - Uses utils function to standardize plot label generation. - Improved handling of variable labels. - Removed "Add as filter variable" button from variable browser module. - Scatterplot matrix module now automatically converts characters to factors with a message. Changes in version 0.2.4 - New PCA module. - Documentation fix for cross table module. - Display variable labels in drop-down menu of data table (#393). - Optional subsetting and ordering datasets for tm_data_table. - Use teal.code::chunks_push_data_merge to include merge code into reproducibility code. - More consistent coloring behavior between bivariate plots. - Updates to missing data module. - Updated graph axis labels for the following modules: bivariate plot, missing data, response plot, regression module, scatterplot, scatterplot matrix. - Simplify scatterplot matrix to display plot within one dataset only. Changes in version 0.2.3 - Fixed naming in tm_variable_browser. - Correlation added to Scatter Plot Matrix. - Opacity slider added to tm_bivariate. - Fixes due to bug in teal.devel#313. - Performance enhancements to missing data module. - Fix bug with reactivity in scatterplot matrix module. Changes in version 0.2.2 - New module to summarize missing data. - Refactor of variable browser module. - Correct display of density / frequency option in bivariate plot. Changes in version 0.2.1 - Fix magrittr loading in reproducible code. Changes in version 0.2.0 - Refactor functions with data extract and data merge. - Create sample_app.R demonstrating teal.modules.general modules. - Rename tm_table on tm_cross_table. - Include show R code in all modules. - Merge tm_cross_table and tm_t_percentage_table into one module. Changes in version 0.1.0 - Initial release.